I followed your suggestion for removing the plug in the hot end and attempted a print. Once again, the first few layers printed fine, but then I began running into flow issues again. I cancelled the print and removed the hot end expecting another plug, but there was none. So, your suggestion did fix all issues with the hot end, but now there must be some other problem with the feed mechanism. It is extremely difficult to feed material through by hand, so I'm guessing this is an issue with the bowden tube being defective. Is there anything else that could cause these problems?
This sounds exactly like my problems. How fast did they send you a new tube?