Burtoogle, you are correct. The 'Retraction Minimum Travel setting at 6mm was preventing the retraction from occurring prior to z move. I reduced to 2mm and Layer 5 was now correct but Layer 9 was still wrong since it had an even smaller travel move than 2mm. "Maybe there is a case for allowing the retraction in that situation to help with the slow z change." You nailed it. Wish I knew how to do this. .3mf file attached.
arm.3mf