This happens to me all the time, and it has no relation to the "Fix Horrible - Type A" setting. It even happens on STLs with relatively low poly counts. Nothing shows up in X-ray or other modeling programs. Sometimes it adds a full layer, sometimes it adds a random portion of infill.
Screenshot of problem:
https://www.dropbox.com/s/00d4kr3cpx2hivv/Capture.JPG
Link to STL:
http://www.thingiverse.com/thing:208346
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Daid 306
It happens with high polygon models if Fix horrible type A is enabled (in the expert menu) this has been made default which makes this bug pop up. I've fixed it for a next release. Workaround is to turn the fix horrible type A off.
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