I never used the S3D bed levelling option. The machine's bed levelling works just well.
I would suggest just to use the that.
on a side note: I never use more that half the nozzle width as the layer height. By which I mean a 0.4mm nozzle I would never exceed layers of 0.2mm.
S3D's layer height I would use 100% or less. with a little extra extrusion multiplier so it squeezes more into the bed for adhesion.
hope this helps
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