I found the problem.... I updated the firmware with the wrong firmware. :-)) I loaded firmware for a Dual Extruder. Oops.
AutoTowers is cool but very limiting... I am actually about 80% finished with a Blender/Python Dynamic Temperature Tower. I just realized tonight that I did not account for scaling. Once it is compete maybe one of the great community people here will guide me on how to integrate into Cura. It will let you do a single tier or as many tiers as you need and allows for filament name configuration. You wont have to pick a pre-built tower. It can be built exactly to your needs. It's a 1 tower fits all solution. Unfortunately, I am brand new to Blender, Python, Cura, and 3D printing so I need another couple days to adjust for scaling.
Thanks again for the quick response.