Unfortunaly, nothing worked out. It seems like the print "One at a time" setting is the one messing up my pieces :
- Here, with "All at once" setting there is 12 layers in the top part
- But, with "One at a time", there are only 10 layers
Furthermore, the piece that is behind (same but with bigger top part) got his 13th layer (of the top part) removed.
For now, I will simply print using "All at once" until maybe someone find a solution or the bug is patched. Thank you all for your responses.