Same issue here since update to 5.2.11.20190503.
Jul 31 09:25:24 ultimakersystem-ccbdd3001057 python3[809]: 2019-07-31 09:25:24,815 WARNING faultHandler Added Fault: <Fault: level=4 code=48 message='Maximum probe height deviation of 1.32 exceeded between probes ProbePoint(loc:Vector2(40.0, 15.0), z:12.547 bed:59.59 °C, nozzle:195.50 °C) and ProbePoint(loc:Vector2(40.0, 175.0), z:10.041 bed:59.75 °C, nozzle:189.40 °C)' data='{}'>
In automatic leveling process (directly after manual leveling) the nozzles instead of touching the plate do stop about 10mm above the surface.
Regards