Dear Geert,
Thank you for the long detailed reply. Like i suspected it would be a hard thing to figure out. I'm not sure it can be a hardware thing because i own 4 Ultimakers and all have this issue. But i'm gonna clean all the z lead screws to make sure.
For settings i always print with 3 outlines to make sure infill wont show trough and because the problem we see is not the the layers where the model is the same i don't think its model related. Do you think 4 or 5 outlines would improve compared to 3?
Its also why i started changing jerk and accel to make the 3D printers print layers more consisted the Ultimaker default settings has so many variation in it.
For material i only use Ultimaker or Colorfabb and so far i know these are really consisted materials. For testing i tried other spools as well to make sure.
The only thing i might need to improve is maybe the way i use the spools. I mount them on the back or on an external spool holder maybe this can use an upgrade to improve. i will look into it.