I would point the finger towards the stepper, because your measured "error" coincides with the micro stepping distance:
the UM has 78.7402 micro steps/mm (1/16th steps), or 0.0127mm/step, or (if you insist on dirty units) 0.0005in/step.
0.008in/0.0005in=16
I think what you are seeing is the stepper "nudging" to a full step position, before it continues with the micro stepping, which can possibly explained with the energizing of the coils.
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mayoff 0
I decided that it's definitely not the indicator, because if I put my finger on the print head and run a move command, I can feel the pauses even when the head's not touching the indicator.
It also occurred to me that it could be some flaw in the linear bearings cause friction periodically, but I get the pattern on both axes so that seems unlikely.
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