It won't damage your printer but it turns your repeatability to hell. Definitely fix this.
The problem, as Nallath says, is you aren't triggering one of the endstops. With power off push the head around and into that corner (one axis at a time) and listen for the faint click when the endstop is triggered. See if one of the axes isn't triggering. It could be one of your thin metal rods that pass through the head isn't sticking out far enough on the side to hit the endstop. It could be your endstop moved. It could be the fan shroud is no longer symmetrical and that is hitting. It could be lots of minor mechanical things.
If you can't figure out what changed you could just bend the metal arm of the endstop so that it gets triggered sooner.
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nallath 1,124
Sounds like one of your end stops is broken.
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