That's caused by the raft which you have enabled under "Platform adhesion type". Rafts are old school and aren't really used on UM printers these days. With a very clean glass and/or a thin layer of glue you should be able to set this to "None" instead.
Since there are so many tiny parts it's important that the first layer goes down well to make sure they stay in place. Make sure your bed is calibrated "perfectly" and consider levelling it slightly closer to the nozzle to really push the plastic down onto the glass.
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Modified_Gemini 2
Thank you! i couldnt find the answer is the "shrinkage"! it was pretty frustrating when trying to make pieces slide together.
Here are some pics for the second issue ive had with toolpath spacing (i could have sworn i had this issue with top layers, maybe just bottom. My extruder e steps are calibrated.
Finished print
http://i1104.photobucket.com/albums/h326/modified_gemini/IMG_20160408_005824_zpsjtipsocd.jpg
Second layer of raft, spacing of .3mm i believe
http://i1104.photobucket.com/albums/h326/modified_gemini/2_zpsj5fjwpkj.png
Top raft layer, has no spacing
http://i1104.photobucket.com/albums/h326/modified_gemini/3_zpsd4mmznuf.png
First layer of object, has clear spacing in the toolpath
http://i1104.photobucket.com/albums/h326/modified_gemini/4_zpsfom9ulry.png
Second layer of print, less spacing in the toolpath
http://i1104.photobucket.com/albums/h326/modified_gemini/5_zpskuhg2btl.png
A few layers into the print, and theres finally no spacing
http://i1104.photobucket.com/albums/h326/modified_gemini/7_zpsc3cni57a.png
Top layer of print, has no spacing
http://s1104.photobucket.com/user/modified_gemini/media/89_zpsubdu5pgu.png.html?sort=3&o=2
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