First of all, uncheck the "homebuilt" heated bed because if you do that and then install cura it will install one that expects a specific, unusual heated bed design - the one that UM is about to sell (any day now?).
However this is probably unrelated to your issue.
I would just try a few more times. Also as a last resort, remove the arduino from the PCB and program it directly.
Also consider using the arduino ide to install the hex file. Actually I'm not sure if you can do that without compiling it also which is a bit of work so maybe use pronterface to update the arduino?
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donmilne 2
Possible coincidence? I would check your cables.
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