Fixed! Basically, as gr5 proposed I just had to unscrew the two pulley that drives the Y axis (the ones on the console side) and displace the belt a little bit. It took a few try to get it right but I was able to adjust the machine and it prints fair and square as before!
Thanks for the help!
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IRobertI 521
You can find the assembly manual here, at the bottom:
https://github.com/Ultimaker/Ultimaker2
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